Installation of a shiny server
https://www.rstudio.com/products/shiny/download-server/
sudo apt-get update sudo apt-get install openssh-server sudo apt-get install r-base sudo su - \ -c "R -e \"install.packages('shiny', repos='https://cran.rstudio.com/')\"" sudo apt-get install gdebi-core wget https://download3.rstudio.org/ubuntu-14.04/x86_64/shiny-server-1.5.7.907-amd64.deb sudo gdebi shiny-server-1.5.7.907-amd64.deb
The server is accessed by putty : https://mediatemple.net/community/products/dv/204404604/using-ssh-in-putty-
=> 192.168.1.164 use default port 22 to access via putty, you will be prompted for a username and password
The server runs in local in 192.168.1.164:3838
Installation of markdown
sudo su - -c "R -e \"install.packages('rmarkdown')\""
> install.packages('rmarkdown')
Installation du package dans ‘/usr/local/lib/R/site-library’
(car ‘lib’ n'est pas spécifié)
installation des dépendances ‘highr’, ‘markdown’, ‘backports’, ‘glue’, ‘stringi’, ‘knitr’, ‘yaml’, ‘evaluate’, ‘base64enc’, ‘rprojroot’, ‘tinytex’, ‘stringr’
essai de l'URL 'https://cloud.r-project.org/src/contrib/highr_0.7.tar.gz'
Content type 'application/x-gzip' length 17505 bytes (17 KB)
==================================================
downloaded 17 KB
...
Other packages
sudo apt-get install libcurl4-openssl-dev sudo su - -c "R -e \"install.packages('curl')\"" sudo su - -c "R -e \"install.packages('tidyverse')\"" sudo apt-get install libssl-dev sudo su - -c "R -e \"install.packages('openssl')\"" sudo apt-get install libxml2-dev sudo su - -c "R -e \"install.packages('xml2')\"" httr sudo su - -c "R -e \"install.packages('httr')\"" sudo su - -c "R -e \"install.packages('rvest')\"" sudo apt install default-jre
rvest sudo su - -c "R -e \"install.packages('rvest')\"" devtools sudo su - -c "R -e \"install.packages('devtools')\"" sudo su - -c "R -e \"devtools::install_github('cttobin/ggthemr')\"" these packages must also be installed sudo su - -c "R -e \"install.packages('magrittr')\"" sudo su - -c "R -e \"install.packages('pipeR')\"" sudo su - -c "R -e \"install.packages('viridis')\"" sudo su - -c "R -e \"install.packages('DT')\"" sudo su - -c "R -e \"install.packages('leaflet')\"" sudo su - -c "R -e \"install.packages('shinyBS')\"" sudo su - -c "R -e \"install.packages('shinyWidgets')\"" sudo su - -c "R -e \"install.packages('shinydashboard')\"" sudo su - -c "R -e \"install.packages('plotly')\"" su - -c "R -e \"install.packages('shinythemes')\"" su - -c "R -e \"install.packages('rAmCharts')\""
Make your new package lib readable for Shiny Server
sudo chmod 777 /usr/lib/R/site-library
Install apache -- this is not necessary, the shiny has it's own server
apt-get install apache2
Import the data and application to the server. Be sure to save all data in a data subfolder
cd /srv/shiny-server
R -e "source('shiny_01/run.R')"
The above configuration instructs Shiny Server to make the /srv/shiny-server/ directory available at the base URL (/). Any Shiny applications stored in this directory (or its subdirectories), along with any static assets (including images, data, JavaScript?/CSS files, etc.), will be made available at the corresponding URL. For example, see the following directory tree:
+---/srv/shiny-server | +---shinyApp1 | +---server.R | +---ui.R | +---shinyApp2 | +---server.R | +---ui.R | +---assets | +---style.css | +---script.js
If this server were available at http://server.com, the location settings above would make the following publicly available to the user, along with any other file in the tree:
URL Definition http://server.com/shinyApp1 Serve the Shiny App defined in 'shinyApp1' http://server.com/shinyApp2 Serve the Shiny App defined in 'shinyApp2' http://server.com/assets/style.css Serve this static CSS file http://server.com/assets/script.js Serve this static JS file
some usefull command for files
- vi visual editor
- nano other editor
- ll list detailed (ls-al)
- ls list
- cd /
- eleve droits sudo mk
- droits superutilisateur sudo su
- search application apt-cache search keyword apt search apache
- install application
- Change permission for a folder and subfolder
- If you are going for a console command it would be:
- chmod -R 777 /www/store. The -R (or --recursive) options make it recursive.
- Or if you want to make all the files in the current directory have all permissions type:
- chmod -R 777 ./
- ps -aux ps - report a snapshot of the current processes.
- man svn get svn manual
basin commands for vi These basic vi commands are
- Cursor movement h, j, k, l (left, down, up, and right)
- Delete character x
- Delete line dd
- Mode toggle Esc, Insert (or i)
- Quit :q
- Quit without saving :q!
- Run a shell command :sh (use 'exit' to return)
- Save file :w
- Text search /
use MobaXterm? to copy files, shift insert to paste them
subversion
sudo mkdir pesticides svn checkout --force --username cedric svn://w3.eptb-vilaine.fr/p/ventes_pesticides/shiny_01 ls -l #connected as root@srv-web #give right to all files perhaps a little brute force chmod -777 ./ # use mobaXterm to copy de files, can use drag and drop
the server is there
http://185.135.126.249:3838/shiny_01
http://185.135.126.249:3838/shiny_dv
find R
which R
