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Work program - Spain

1. Installing all the tools to use the results of EDA model
   • Software required
     • PostgresSQL, QGIS, PostGIS
       PostgreSQL: ​http://www.postgresql.org/
       QGIS ​http://www.qgis.org/
       PostGIS ​http://postgis.refractions.net/download/windows/
       
     • Eclipse (StatET perspective), SVN and R
       Eclipse ​http://www.eclipse.org/downloads/
       

StatET perspective: We need to install a new software in Eclipse: StatET (repository: ​http://www.walware.de/goto/statet)

Go to Help --> Install New Software and there click on Add:
Name: StatET
Site: ​http://download.walware.de/Eclipse3.7 (because we have this version of Eclipse intalled in the server. Otherwise, download the corresponding file)
Next step is to chose all the type filter text and click Next. It takes a while installing all these things

SVN Then we need to open a new project, called EDA as an StatET perspective and then we will need to install SVN in Eclipse in order to restore this folder directly from Céline's directory

To do so, we need to install new software again, following the same steps of the previous installation, but now using the name:SVN and the location: ​http://subclipse.tigris.org/update_1.6.x

R: ​http://cran.r-project.org/bin/windows/base/ --> last version installed R 2.14.1

Installation of the R Packages of RJ and rJava (the last one directly by using the install packages on R)
It is important to pick the RJ package version/repository compatible to the used StatET version!
To install the package from the repository, use the following command in a common R Term console:
For RJ 1.0 (StatET 2.0): install.packages(c("rj", "rj.gd"), repos="​http://download.walware.de/rj-1.0")

Once everything is installed, we need to import the files (EDA/trunk and EDAData) from the repository (​svn://svn.eptb-vilaine.fr)
To do so: we need to right click on the project and select import from SVN (Checkout Projects from SVN) by using the repository given above
Finally, we need to configure the run in an R console. To do so we need to click on the run button, select 'Run configuration' and the following window will be opened and should be completed as it is in the next image:

Image (source(data))
We need to go to the R Config slide and Add a new configuration with the details shown in the next figure:
Image (source...)

• Access to the trac –a password is required and has been created for each partners
  

• Teamviewer6 to make easier exchanges between partners ​http://www.teamviewer.com/es/download/currentversion.aspx
  

• Scripts and Code
  • R Scripts
  • Installing package to use in R
  • Database and tables to install into Postgres

2. Presentation of EDA methodology
   • EDA database building and GIS stuff
     • Electrofishing
     • Obstacle
     • Land Cover
     • Other…
   • GAM delta-gamma model
     • Dataframe building from EDA2.0 database
     • Models fitting
   • Graphics tools

3. Basque EMU application
   • Run the EDA program (practical)
   • Results transfer from POSE project
   • Discussion of the result (Limitation of the model)

This project is still in progress, there are some limitations to use the result of EDA.

4. Spain application
   • Identify steps to apply EDA to the whole of Spain.
   • Identify the data required to run the model (electro-fishing and dams if it’s possible in the best format)

5. Help on a EDA presentation for the post-evaluation report

6. Future collaborations
   • Requirement
   • Resources

Saving and loading the database with Eider
Spain dbeel?
Spain electrofishing data?
Spain clc?
Spain dams?